chr. ORF's name  start  stop length S1 S2 V1 V2 D cod. prob. YZ score MIPS Genol. T Wood's annotation  brief ID
1 TY1A_A 165862 164543 440 -7.35 -54.04 2.98 6.01 2.22 0.79 0.62 1     spurious  TY1A protein
1 TY1B_A 164183 160596 1196 13.96 -42.98 5.63 5.81 1.29 0.94 0.57 1     spurious  Ty1B protein
1 YAL001c 151163 147594 1160 41.94 -29.44 8.57 3.41 0.50 1.00 0.64 1 2 5    TFIIIC (transcription initiation factor) subunit, 138 kD
1 YAL002w 143998 147525 1176 55.12 -83.66 3.52 2.64 0.96 0.97 0.55 1 1 6    vacuolar sorting protein, 134 kD
1 YAL003w 142172 143155 206 83.16 -54.93 5.26 4.00 1.40 0.93 0.91 1 1 6    translation elongation factor eEF1beta
1 YAL004w 140758 141402 215 27.85 114.30 4.09 2.32 3.85 0.40 0.47 2 1 2 spurious  strong similarity to A.klebsiana glutamate dehydrogenase
1 YAL005c 141429 139504 642 68.40 -56.93 8.15 4.05 0.84 0.98 0.79 1 1 11    heat shock protein of HSP70 family, cytosolic
1 YAL007c 138343 137699 215 59.59 -102.53 3.64 1.89 1.49 0.92 0.67 1 1 5    p24 protein involved in membrane trafficking
1 YAL008w 136912 137505 198 62.10 162.76 2.73 2.16 3.57 0.46 0.48 5 2 1    hypothetical protein
1 YAL009w 135852 136628 259 38.85 153.43 2.87 0.14 4.02 0.36 0.53 1 2 7    meiotic protein
1 YAL010c 135663 134185 493 30.26 -56.31 1.88 2.76 1.52 0.92 0.48 1 2 4    involved in mitochondrial morphology and inheritance
1 YAL011w 132159 134072 638 30.16 -17.94 6.78 5.78 0.98 0.97 0.67 4 2 3    weak similarity to Mus musculus p53-associated cellular protein
1 YAL012w 130798 131979 394 68.96 -78.69 4.21 3.60 1.08 0.96 0.74 1 1 7    cystathionine gamma-lyase
1 YAL013w 129268 130353 362 28.93 -18.80 4.56 5.22 0.99 0.97 0.70 1 2 3    regulator of phospholipid metabolism
1 YAL014c 129017 128403 205 0.00 -46.04 0.49 2.72 2.82 0.65 0.61 5 2 1    hypothetical protein
1 YAL015c 128101 126905 399 32.41 -56.31 3.74 1.62 1.00 0.97 0.61 1 1 4    DNA repair protein
1 YAL016c-a 125068 124757 104 109.80 -139.97 2.61 3.20 3.32 0.53   6 0 0    questionable ORF
1 YAL016w 124878 126782 635 78.25 -101.96 5.07 3.45 1.70 0.89 0.65 1 1 6    ser/thr protein phosphatase 2A, regulatory chain A
1 YAL017w 120224 124291 1356 43.55 -51.82 6.07 4.53 0.15 1.00 0.62 3 1 5    similarity to ser/thr protein kinases
1 YAL018c 119540 118566 325 81.57 -151.78 1.51 2.58 3.12 0.58 0.50 4 1 4    weak similarity to hypothetical proteins YOL047c and YOL048c
1 YAL019w 114918 118310 1131 44.17 -34.17 7.25 6.83 0.37 1.00 0.69 3 1 6    similarity to helicases of the Snf2/Rad54 family
1 YAL019w-a 114249 114815 189 -81.57 -126.38 1.99 1.72 5.47 0.07   6 0 0    questionable ORF
1 YAL020c 114614 113616 333 73.91 60.02 2.97 1.64 2.91 0.63 0.56 1 2 3    alpha-tubulin suppressor
1 YAL021c 113358 110848 837 13.52 -37.05 3.70 4.42 1.36 0.93 0.60 1 1 7    transcriptional regulator
1 YAL022c 110429 108879 517 56.12 -146.98 3.71 3.15 2.28 0.78 0.59 1 2 4    intracellular membrane protein involved in nucleoside transport
1 YAL023c 108550 106277 758 98.31 -126.38 3.27 1.71 2.80 0.66 0.50 1 1 7    mannosyltransferase
1 YAL024c 105874 101570 1435 23.48 -42.81 7.68 5.36 0.93 0.98 0.58 1 1 7    GDP/GTP exchange factor
1 YAL025c 101147 100230 306 55.30 5.91 5.42 5.00 1.31 0.94 0.69 1 1 2    nuclear viral propagation protein
1 YAL026c 99699 95635 1355 62.46 -67.42 7.11 2.97 0.72 0.99 0.62 1 1 8    P-type amino-phospholipids-ATPase
1 YAL026c-a 95825 95391 145 -5.86 -167.91 3.26 1.19 3.58 0.46   6 0 0    questionable ORF
1 YAL027w 94689 95471 261 20.81 -70.97 3.31 1.90 1.39 0.93 0.60 5 2 5    hypothetical protein
1 YAL028w 92902 94485 528 57.09 -52.50 1.76 4.72 1.47 0.92 0.61 4 2 3    similarity to hypothetical protein YOR324c
1 YAL029c 92272 87860 1471 39.91 -37.92 7.27 3.14 0.38 1.00 0.59 1 1 8    myosin heavy chain, unconventional (class V) isoform
1 YAL030w 87288 87751 117 46.27 -90.00 2.94 1.02 1.61 0.90 0.69 1 1 4    synaptic vesicle-associated membrane protein
1 YAL031c 87033 84754 760 11.04 -68.47 3.03 4.25 1.61 0.90 0.52 5 2 2    hypothetical protein
1 YAL031w-a 84671 84976 102 113.20 173.66 0.75 1.79 4.56 0.24   6 0 0    questionable ORF
1 YAL032c 84476 83340 379 38.16 -32.87 4.57 3.98 0.52 0.99   1 1 3    pre-mRNA splicing factor
1 YAL033w 82708 83226 173 31.83 -63.43 2.60 0.51 1.79 0.87 0.58 1 1 2    required for processing of tRNAs and rRNAs
1 YAL034c 82103 80715 463 -5.08 -45.58 2.10 3.25 2.36 0.76 0.35 4 2 5    similarity to hypothetical protein YOR338w
1 YAL034c-b 79844 79494 117 23.63 -147.26 1.61 1.54 2.96 0.62 0.49 6 2 1 spurious  questionable ORF
1 YAL034w-a 79720 80586 289 42.27 -20.14 4.37 1.88 0.94 0.98 0.67 1 2 4    determining metaphase spindle length
1 YAL035w 76429 79434 1002 61.10 -27.72 9.02 6.32 0.73 0.99 0.75 1 1 8    general translation factor eIF2 homolog
1 YAL036c 76154 75048 369 50.67 -94.76 4.85 0.63 1.67 0.89 0.68 2 1 9    strong similarity to GTP-binding proteins
1 YAL037c-a 73520 73431 30 -5.19 -146.31 2.02 1.32 3.39 0.51 0.56 5 3 0    hypothetical protein - identified by SAGE
1 YAL037c-b 73302 72331 324 59.30 96.07 4.14 2.63 3.38 0.51   4 1 3    similarity to Z. rouxii hypothetical protein
1 YAL037w 74022 74822 267 11.00 -85.76 2.24 1.66 2.12 0.81 0.55 2 2 2    strong similarity to GTP-binding proteins
1 YAL038w 71788 73287 500 63.27 -82.35 7.06 3.02 0.98 0.97 0.76 1 1 9    pyruvate kinase
1 YAL039c 69527 68721 269 63.43 -36.38 1.50 1.44 1.92 0.85 0.58 1 1 4    holocytochrome-c synthase (cytochrome c heme lyase)
1 YAL040c 67522 65783 580 0.00 -82.87 0.25 5.36 3.02 0.60 0.49 1 2 5    cyclin, G1/S-specific
1 YAL041w 62842 65403 854 15.88 -61.64 3.88 4.39 1.25 0.95 0.56 1 1 3    GTP/GDP exchange factor for Cdc42p
1 YAL042c-a 61610 61236 125 19.65 -141.34 1.33 1.72 2.97 0.61 0.45 6 0 0 spurious  questionable ORF
1 YAL042w 61318 62562 415 58.89 -6.12 3.33 1.38 1.50 0.92 0.62 1 1 6    component of copii vesicles involved in transport between the ER and golgi complex
1 YAL043c 61054 58700 785 21.08 -73.53 3.17 4.28 1.30 0.94 0.60 1 1 5    pre-tRNA processing protein / PF I subunit
1 YAL044c 58485 57955 177 58.78 -52.70 2.90 1.98 1.06 0.97 0.72 1 1 3    glycine decarboxylase, subunit H
1 YAL044w-a 57520 57849 110 26.57 -21.04 1.28 1.33 2.19 0.80   3 1 1    similarity to S. pombe uvi31
1 YAL045c 57798 57493 102 18.43 -168.69 0.63 1.01 3.76 0.42 0.54 5 0 0 spurious  hypothetical protein
1 YAL046c 57387 57034 118 -4.76 -71.57 2.22 0.58 2.71 0.68 0.52 4 1 7    weak similarity to hypothetical protein S. pombe
1 YAL047c 56859 54994 622 22.09 -29.86 4.37 4.99 1.07 0.97 0.61 1 1 4    Stu2p Interactant
1 YAL047w-a 54586 54912 109 85.24 -163.74 1.15 2.39 3.50 0.48   4 2 1    similarity to S. bayanus hypothetical protein
1 YAL048c 54791 52806 662 57.09 -75.96 3.15 1.92 1.12 0.96 0.56 1 1 5    vacuolar aspartic proteasse
1 YAL049c 52597 51860 246 77.97 -60.95 3.98 1.31 1.54 0.91 0.70 4 1 5    weak similarity to Legionella small basic protein sbpA
1 YAL051w 48564 51749 1062 34.19 -78.07 4.86 2.23 0.93 0.98 0.53 1 2 3    peroxisome proliferating transcription factor
1 YAL053w 45899 48247 783 66.73 -119.97 3.89 4.58 1.79 0.87 0.60 4 2 7    strong similarity to hypothetical proteins YOR365c,YGL139w,YPL221w
1 YAL054c 45022 42884 713 77.79 -66.41 5.13 3.56 1.24 0.95 0.68 1 1 5    acetyl-CoA synthetase
1 YAL055w 42177 42716 180 47.94 23.20 4.12 0.57 2.14 0.81 0.60 1 2 1    peroxisomal matrix protein import
1 YAL056c-a 39047 38700 116 26.57 -158.20 0.83 2.00 3.31 0.53 0.41 6 0 0 spurious  questionable ORF
1 YAL056w 39260 41800 847 47.79 -30.51 4.50 2.23 0.61 0.99 0.58 4 2 2    similarity to hypothetical protein YOR371c
1 YAL058w 37465 38970 502 39.29 -55.95 3.17 1.99 0.89 0.98 0.61 1 1 2    calnexin, involved in regulation of secretion
1 YAL059c-a 36919 36500 140 149.93 -152.10 1.86 3.25 4.81 0.19   6 0 0    questionable ORF
1 YAL059w 36510 37145 212 40.14 -27.90 4.58 2.64 0.60 0.99 0.71 1 2 2    involved in cell wall biosynthesis
1 YAL060w 35156 36301 382 62.04 -68.20 4.69 0.55 1.52 0.91 0.70 1 1 7    stereospecific (2R, 3R)-2,3-butanediol dehydrogenase
1 YAL061w 33449 34699 417 61.31 -9.87 5.30 1.14 1.47 0.92 0.67 3 1 9    similarity to alcohol/sorbitol dehydrogenase
1 YAL062w 31568 32938 457 69.44 -49.18 6.00 1.36 1.25 0.95 0.70 1 1 8    NADP-glutamate dehydrogenase
1 YAL063c 27969 24004 1322 29.96 -95.66 10.79 12.82 1.25 0.95 0.69 2 2 5    strong similarity to Flo1p
1 YAL064c-a 13744 13367 126 92.73 -90.00 1.87 1.60 2.53 0.72 0.62 2 2 2    strong similarity to Flo1p, Flo5p - putative pseudogene
1 YAL064w 21526 21849 108 -90.00 -153.43 0.77 0.86 6.24 0.00 0.37 5        hypothetical protein
1 YAL064w-b 12047 12424 126 90.00 -135.00 4.28 3.15 2.56 0.71   6 3 0 spurious  questionable ORF
1 YAL065c 11952 11569 128 34.70 -109.80 4.19 2.35 1.51 0.92 0.69 2 3 0    strong similarity to Flo1p and Flo9p - putative pseudogene
1 YAL066w 10092 10397 102 -45.00 -163.07 2.10 2.38 4.59 0.23 0.31 3 3 0 very hypoth.  weak similarity to membrane protein yybF - Bacillus subtilis
1 YAL067c 9017 7239 593 78.81 -80.54 3.81 0.75 1.89 0.86 0.53 1 1 8    suppressor of sulfoxyde ethionine resistance
1 YAL068c 2169 1810 120 68.50 -99.16 3.24 2.87 1.52 0.91 0.77 4 2 1    strong similarity to subtelomeric encoded proteins
1 YAR002c-a 154721 154065 219 76.29 -47.73 2.85 1.00 1.76 0.88 0.67 1 1 3    p24 protein involved in membrane trafficking
1 YAR002w 152254 153870 539 40.27 -48.89 4.80 5.83 0.27 1.00 0.67 1 2 3    peroxisomal matrix protein import
1 YAR003w 155002 156279 426 55.62 -24.78 3.35 1.39 1.22 0.95 0.61 3 1 6    similarity to human RB protein binding protein
1 YAR007c 158616 156754 621 42.38 -29.66 5.60 3.32 0.49 1.00 0.68 1 1 6    DNA replication factor A, 69 KD subunit
1 YAR008w 158962 159786 275 49.54 -21.80 2.69 0.32 1.83 0.87 0.57 1 1 4    tRNA splicing endonuclease gamma subunit
1 YAR014c 168862 166757 702 61.84 -21.13 6.08 6.60 0.86 0.98 0.72 4 2 3    similarity to hypothetical protein  S.pombe
1 YAR015w 169366 170283 306 61.11 -49.09 3.79 2.27 0.73 0.99 0.69 1 1 3    phosphoribosylamidoimidazole-succinocarboxamide synthase
1 YAR018c 171694 170390 435 30.78 1.82 2.62 3.02 1.62 0.90 0.55 1 1 4    ser/thr protein kinase
1 YAR019c 175129 172208 974 30.32 -88.45 3.93 3.56 1.12 0.96 0.57 1 1 6    protein kinase of the MAP kinase kinase kinase family
1 YAR019w-a 174992 175333 114 39.29 161.57 1.33 0.30 4.09 0.34   6 0 0    questionable ORF
1 YAR020c 177017 176853 55 97.13 -103.24 3.26 2.35 2.38 0.76 0.84 2 3 0    strong similarity to members of the srp1p/Tip1p family
1 YAR023c 179814 179278 179 30.47 -109.65 1.47 1.11 2.43 0.74 0.54 4 3 0    strong similarity to Fun55p, Fun59p, YGL051w, YCR007c, YGL053w, YAR031w and YAR028w
1 YAR027w 183760 184464 235 41.19 -104.62 2.08 1.55 1.95 0.84 0.59 4 2 1    strong similarity to YAR028w, YCR007c, YGL053w, YAR031w, FUN59p and YGL051w
1 YAR028w 184882 185583 234 52.85 -90.00 2.71 1.96 1.42 0.93 0.64 4 3 0    strong similarity to Fun55p, YGL053w, YCR007c, YAR031w, Fun59p and YGL051w
1 YAR029w 186311 186532 74 59.04 9.46 0.68 1.41 2.64 0.70 0.51 4 3 0 very hypoth.  strong similarity to YAR031w, YGL053w, Fun55p, Fun59p and YGL051w
1 YAR030c 186843 186505 113 -110.56 160.56 0.80 1.70 7.29 0.00 0.25 5 3 0 very hypoth.  hypothetical protein
1 YAR031w 186826 187719 298 61.70 -34.38 1.71 1.33 1.84 0.86 0.55 4 3 0    strong similarity to YGL053w, Fun59p, YGL051w, Fun55p, YAR028w and YCR007c
1 YAR033w 188097 188798 234 38.99 -73.61 1.77 1.16 1.85 0.86 0.59 4 3 0    strong similarity to YGL051w, YGL053w, YAR031w, Fun55p, YAR028w and YCR007c
1 YAR035w 190183 192243 687 48.50 -63.75 1.32 3.11 1.70 0.89 0.57 1 1 4    carnitine acetyltransferase, mitochondrial
1 YAR042w 192609 193376 256 -8.97 -71.57 2.40 2.17 2.50 0.73 0.60 3 2 4    similarity to mammalian oxysterol-binding proteins
1 YAR044w 193595 196171 859 54.58 -26.70 5.95 6.53 0.60 0.99 0.68 3 1 9    similarity to human oxysterol binding protein (OSBP)
1 YAR047c 201775 201458 106 -125.54 -172.87 0.84 1.57 7.54 0.00 0.31 5 3 0 very hypoth.  hypothetical protein
1 YAR050w 203389 207999 1537 30.38 -95.87 12.36 13.46 1.24 0.95 0.70 1 2 4    cell wall protein involved in flocculation
1 YAR053w 208353 208646 98 83.66 -158.20 0.91 2.18 3.47 0.49 0.38 5 1 0 very hypoth.  hypothetical protein
1 YAR060c 217478 217146 111 23.63 95.71 1.66 0.95 3.92 0.38 0.33 4 3 0 very hypoth.  identical to hypothetical protein YHR212c
1 YAR061w 218126 218326 67 158.20 -72.90 0.66 1.66 4.84 0.18 0.47 2 3 0    strong similarity to N-terminus of Flo1p - putative pseudogene
1 YAR062w 218535 219128 198 60.64 -85.03 2.61 3.28 1.34 0.94 0.67 2 2 2    strong similarity to Flo1p - putative pseudogene
1 YAR064w 220184 220480 99 116.57 90.00 0.22 0.30 4.99 0.15 0.41 5 3 0 very hypoth.  hypothetical protein
1 YAR066w 221035 221643 203 93.63 -98.75 4.43 2.77 2.12 0.81 0.71 4 3 0    similarity to Sta1p, identical to YHR214w hypothetical protein
1 YAR068w 222392 222874 161 -78.16 -121.48 4.99 4.53 5.11 0.13 0.41 4 3 0    strong similarity to hypothetical protein YHR214w-a
1 YAR069c 224290 224000 97 63.43 -172.87 1.14 2.46 3.41 0.50 0.53 5 3 0 very hypoth.  hypothetical protein
1 YAR070c 224848 224552 99 -38.66 145.01 0.64 1.23 5.53 0.06 0.38 5 3 0 very hypoth.  hypothetical protein
1 YAR071w 225446 226846 467 69.92 -27.95 4.58 2.57 1.04 0.97 0.64 1 2 7    secreted acid phosphatase
1 YAR073w 227728 228936 403 59.96 -92.39 4.78 1.20 1.48 0.92 0.65 2 1 4    strong similarity to IMP dehydrogenases
1 YAR075w 228830 229300 157 74.29 -39.81 2.65 0.62 1.92 0.85 0.62 2 1 2    strong similarity to IMP dehydrogenases