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                                  ---  PhyML v3.0  ---                                             
                                                                                                  
    A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood    
                            Stephane Guindon & Olivier Gascuel                                      
                                                                                                  
                                http://atgc.lirmm.fr/phyml                                          
                                                                                                  
                         Copyright CNRS - Universite Montpellier II                                 
                                                                                                  
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. Sequence file : smart-gap-naked_convert.phy
. Data set : #1
. Tree search : SPRs. Initial tree : BIONJ
. Model of amino acids substitution : C20
. Number of taxa : 113
. Log-likelihood : -1593474.29692
. Discrete gamma model : Yes
  - Number of categories : 100
  - Gamma shape parameter : 0.684
. Proportion of invariant : 0.120
weight	Gamma	Conf	Pinvar
Model: 0	0.055991	0.684039	0.000000	0.119833
Model: 1	0.051482	0.684039	0.000000	0.119833
Model: 2	0.081292	0.684039	0.000000	0.119833
Model: 3	0.072198	0.684039	0.000000	0.119833
Model: 4	0.055672	0.684039	0.000000	0.119833
Model: 5	0.033100	0.684039	0.000000	0.119833
Model: 6	0.058950	0.684039	0.000000	0.119833
Model: 7	0.026376	0.684039	0.000000	0.119833
Model: 8	0.030758	0.684039	0.000000	0.119833
Model: 9	0.037670	0.684039	0.000000	0.119833
Model: 10	0.030306	0.684039	0.000000	0.119833
Model: 11	0.080878	0.684039	0.000000	0.119833
Model: 12	0.026335	0.684039	0.000000	0.119833
Model: 13	0.057910	0.684039	0.000000	0.119833
Model: 14	0.037125	0.684039	0.000000	0.119833
Model: 15	0.058687	0.684039	0.000000	0.119833
Model: 16	0.056148	0.684039	0.000000	0.119833
Model: 17	0.034981	0.684039	0.000000	0.119833
Model: 18	0.054494	0.684039	0.000000	0.119833
Model: 19	0.059647	0.684039	0.000000	0.119833
. Time used 676h48m0s
. -> 2436480 seconds
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